Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs4839375 chr1:114848708 G/T 0 171 0.4 15.63 15.57 KM Plot
PAAD rs4861642 chr4:185829761 G/A 1.63E-5 176 15.55 15.12 4.63 KM Plot
PAAD rs4871602 chr8:126474065 C/T 1.53E-6 176 15.67 13.12 3.43 KM Plot
PAAD rs4878624 chr9:35667163 C/T 8.46E-7 173 15.42 16.93 3.43 KM Plot
PAAD rs4878625 chr9:35669904 A/G 4.15E-7 178 3.43 16.93 15.33 KM Plot
PAAD rs493001 chr11:74678203 T/G 9.38E-5 178 4.27 15.38 15.67 KM Plot
PAAD rs4935924 chr11:125543297 C/G 4.72E-5 178 16.03 11.6 4.1 KM Plot
PAAD rs4935925 chr11:125552419 A/T 4.72E-5 178 16.03 11.6 4.1 KM Plot
PAAD rs4935927 chr11:125575694 A/G 0.000112 177 16.08 14.18 5.03 KM Plot
PAAD rs4935928 chr11:125595631 A/T 9.4E-5 178 16.1 14.18 5.03 KM Plot
PAAD rs4935929 chr11:125595749 T/C 9.4E-5 178 16.1 14.18 5.03 KM Plot
PAAD rs4935939 chr11:125678542 G/C 7.29E-5 178 16.03 11.6 4.1 KM Plot
PAAD rs4935943 chr11:125712010 T/C 5.8E-5 178 15.95 12.2 4.1 KM Plot
PAAD rs4937018 chr11:125572123 G/A 4.72E-5 178 16.03 11.6 4.1 KM Plot
PAAD rs4937019 chr11:125572222 T/C 0.000112 177 16.08 14.18 5.03 KM Plot